Nicol S, Lehodey P, Senina I, Bromhead D, Frommel AY, Hampton J, Havenhand J, Margulies D, Munday PL, Scholey V, Williamson JE and Smith N (2022). Ocean Futures for the World’s Largest Yellowfin Tuna Population Under the Combined Effects of Ocean Warming and Acidification. Front. Mar. Sci. 9:816772. doi: 10.3389/fmars.2022.816772
Green D.B., Bestley S., Corney S.P., Trebilco R., Lehodey P., Hindell M.A. (2021). Modelling circumpolar spawning habitat quality to identify regions with potential to support high larval production for Antarctic krill. Geophysical Research Letters, 48(12) https://doi.org/10.1029/2020GL091206
Romagosa M, Pérez-Jorge S, Cascão I, Mouriño H, Lehodey P, Pereira A, Marques TA, Matias L, Silva MA. (2021). Food talk: 40-Hz fin whale calls are associated with prey biomass. Proc. R. Soc. B 288: 20211156. https://doi.org/10.1098/rspb.2021.1156
Bell J.D., Senina I., Adams T., Aumont O., Calmettes B., Clark S., Dessert M., Hampton J., Hanich Q., Harden-Davies H., Gehlen M., Gorgues T., Holmes G., Lehodey P., Lengaigne M., Mansfield B., Menkes C., Nicol S., Pasisi C., Pilling G., Ota Y., Reid C., Ronneberg E., Sen Gupta A., Seto K., Smith N., Taei S., Tsamenyi M., Williams P. (2021). Pathways to sustaining tuna-dependent Pacific Island economies during climate change. Nature Sustainability https://doi.org/10.1038/s41893-021-00745-z
Pérez-Jorge S., Tobeña M., Prieto R., Vandeperre F., Calmettes B., Lehodey P, Silva M.A. (2020). Environmental drivers of large-scale movements of baleen whales in the mid-North Atlantic Ocean. Diversity and Distributions, 26(6): 683-698, https://doi.org/10.1111/ddi.13038
Green, D.B., Bestley, S., Trebilco, R., Corney, S.P., Lehodey, P., McMahon, C.R., Guinet, C. and Hindell, M.A. (2020), Modelled mid‐trophic pelagic prey fields improve understanding of marine predator foraging behaviour. Ecography. doi:10.1111/ecog.04939
Bell J., Allain V., Sen Gupta A., Johnson J.E., Hampton J., Hobday A.J., Lehodey P., Lenton A., Moore B.R., Pratchett M.S., Senina I., Smith N., Williams P. (2018). Chapter 14: Climate change impacts, vulnerabilities and adaptations: Western and Central Pacific Ocean marine fisheries. In Barange M. et al., Eds. Impacts of climate change on fisheries and aquaculture: synthesis of current knowledge, adaptation and mitigation options. FAO Fisheries and Aquaculture Technical Paper No. 627. Rome, FAO.: 305-324.
Romagosa M., Lucas C., Pérez-Jorge S., Tobeña M., Lehodey P., Reis J., Cascão I., Lammers M. O., Caldeira R. M. A., Silva M. A. (2020). Differences in regional oceanography and prey biomass influence the presence of foraging odontocetes at two Atlantic seamounts. Marine Mammal Science, 36(1): 158-179, https://doi.org/10.1111/mms.12626
Senina I., Lehodey P., Hampton J., Sibert J. (2020). Quantitative modeling of the spatial dynamics of South Pacific and Atlantic albacore tuna populations. Deep Sea Research 175, 104667 https://doi.org/10.1016/j.dsr2.2019.104667
Senina I., Lehodey P., Sibert J., Hampton J., (2019) Improving predictions of a spatially explicit fish population dynamics model using tagging data. Canadian Journal of Aquatic and Fisheries Sciences. 77(3): 576-593, https://doi.org/10.1139/cjfas-2018-0470
Lehodey P., Senina I., Wibawa T. A., Titaud O., Calmettes B., Tranchant B., and P. Gaspar (2018). Operational modelling of bigeye tuna (Thunnus obesus) spatial dynamics in the Indonesian region. Marine Pollution Bulletin, 131: 19-32 https://doi.org/10.1016/j.marpolbul.2017.08.020
Dragon A-C., Senina, Hintzen N.T., Lehodey P., (2018). Modelling South Pacific Jack Mackerel spatial population dynamics and fisheries. Fisheries Oceanography, 27 (2): 97-113, http://onlinelibrary.wiley.com/doi/10.1111/fog.12234/full
Dragon AC, Senina I., Conchon A., Titaud O., Arrizabalaga H. and Lehodey P. (2015). Modeling spatial population dynamics of North Atlantic Albacore tuna under the influence of both fishing and climate variability. Canadian Journal of Fisheries and Aquatic Sciences. 72: 1–15 http://www.nrcresearchpress.com/doi/abs/10.1139/cjfas-2014-0338
Lehodey, P., Conchon, A., Senina, I., Domokos, R., Calmettes, B., Jouanno, J., Hernandez, O., and Kloser, R. (2015) Optimization of a micronekton model with acoustic data. – ICES Journal of Marine Science, 72(5): 1399-1412. https://academic.oup.com/icesjms/article/72/5/1399/765328
Senina I., M. Borderies, P. Lehodey. 2015. A spatio-temporal model of tuna population dynamics and its sensitivity to the environmental forcing data. Applied Discrete Mathematics And Heuristic Algorithms, Online journal of Samara State University, 1, 3, pp. 5-20.
Lehodey P., Senina I., Nicol S., Hampton J. (2014). Modelling the impact of climate change on South Pacific albacore tuna. Deep Sea Research, 113: 246–259. http://www.sciencedirect.com/science/article/pii/S0967064514003051
Lambert C, Mannocci L, Lehodey P, Ridoux V (2014) Predicting Cetacean Habitats from Their Energetic Needs and the distribution of Their Prey in Two Contrasted Tropical Regions. PLoS ONE 9(8): e105958. doi:10.1371/journal.pone.0105958
Lehodey P., Senina I., Dragon A-C., Arrizabalaga H. (2014). Spatially explicit estimates of stock size, structure and biomass of North Atlantic albacore Tuna (Thunnus alalunga). Earth System Science Data Discussion, 7, 169–195.
Sibert J, Senina I, Lehodey P, Hampton J (2012). Shifting from marine reserves to maritime zoning for conservation of Pacific bigeye tuna (Thunnus obesus). US Proceedings of the National Academy of Sciences. DOI/10.1073/pnas.1209468109 http://www.pnas.org/content/109/44/18221.full
Hernandez O., Lehodey P., Senina I., Echevin V., Ayon P., Bertrand A., Gaspar P., (2014). Understanding mechanisms that control fish spawning and larval recruitment: Parameter optimization of an Eulerian model (SEAPODYM-SP) with Peruvian anchovy and sardine eggs and larvae data. Progress in Oceanography 123, 105-122. http://www.sciencedirect.com/science/article/pii/S0079661114000275
Abecassis M, Senina I, Lehodey P, Gaspar P, Parker D, Balazs G.,Polovina J., (2013). A Model of Loggerhead Sea Turtle (Caretta caretta) Habitat and Movement in the Oceanic North Pacific. PLoS ONE 8(9): e73274. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0073274
Bell JD, Ganachaud A., Gehrke PC, Griffiths SP, Hobday AJ, Hoegh-Guldberg O, Johnson, JE Le Borgne R, Lehodey P, Lough JM, Matear RJ, Pickering TD, Pratchett MS, Sen Gupta A, Senina I and Waycott M., (2013) Tropical Pacific fisheries and aquaculture will respond differently to climate change. Nature Climate Change, 3: 591–599. http://www.stewartcalculus.com/data/BIOCALCULUS/BB/BB_Chapter9/E9.4.2/nclimate1838.pdf
Lehodey P., Senina I., Calmettes B, Hampton J, Nicol S. (2013). Modelling the impact of climate change on Pacific skipjack tuna population and fisheries. Climatic Change, 119(1): 95-109. https://link.springer.com/article/10.1007/s10584-012-0595-1
Senina, I., Royer, F., Lehodey, P., Hampton, J., Nicol, S., Ogura, M., Kiyofuji, H and J. Sibert. 2012. Integrating conventional and electronic tagging data into SEAPODYM. Pelagic Fisheries Research Program of University of Hawaii at Manoa Newsletter, V. 16, No 1
Patrick Lehodey, John Hampton, Rich W Brill, Simon Nicol, Inna Senina, Beatriz Calmettes, Hans O Pörtner, Laurent Bopp, Tatiana Ilyina, Johann D Bell and John Sibert. Vulnerability of oceanic fisheries in the tropical Pacific to climate change. Chapter 8 in “Vulnerability of Tropical Pacific Fisheries and Aquaculture to Climate Change. SPC, 2011. pp 463-493.
Lehodey P., Senina I., Sibert J., Bopp L, Calmettes B., Hampton J., Murtugudde R. (2010). Preliminary forecasts of population trends for Pacific bigeye tuna under the A2 IPCC scenario. Progress in Oceanography. 86: 302–315 http://www.sciencedirect.com/science/article/pii/S0079661110000558
Lehodey P., Murtugudde R., Senina I. (2010). Bridging the gap from ocean models to population dynamics of large marine predators: a model of mid-trophic functional groups. Progress in Oceanography, 84: 69–84 http://www.sciencedirect.com/science/article/pii/S0079661109001414
Lehodey, P., Senina, I., Sibert, J., Bopp, L., Calmettes, B., Hampton, J and R. Murtugudde. 2010. Preliminary forecasts of Pacific bigeye tuna population trends under the A2 IPCC scenario. Progress in Oceanography. Vol.86, pp 302-315.
Brasseur, P., Gruber, N., Barciela, R., Brander, K., Hobday, A. J., Huret, M., Lehodey, P., Moulin, C., Murtugudde,R., Senina, I., Svendsen, E. and R. Matear. 2009. Integrating biogeochemistry and ecology into ocean data assimilation systems. Oceanography, Vol.22, No.3.
Lehodey P., Senina I., Murtugudde R. (2008). A Spatial Ecosystem And Populations Dynamics Model (SEAPODYM) – Modelling of tuna and tuna-like populations. Progress in Oceanography, 78: 304-318. http://www.sciencedirect.com/science/article/pii/S007966110800116X
Senina I., Sibert J., & Lehodey P. (2008). Parameter estimation for basin-scale ecosystem-linked population models of large pelagic predators: application to skipjack tuna. Progress in Oceanography, 78: 319-335. http://www.sciencedirect.com/science/article/pii/S0079661108001171
Lehodey P., Chai F., & Hampton J. (2003). Modelling climate-related variability of tuna populations from a coupled ocean-biogeochemical-populations dynamics model. Fisheries Oceanography, 12(4): 483-494 http://onlinelibrary.wiley.com/doi/10.1046/j.1365-2419.2003.00244.x/full
Lehodey P., (2001). The pelagic ecosystem of the tropical Pacific Ocean: dynamic spatial modelling and biological consequences of ENSO. Progress in Oceanography, 49: 439-468. http://www.sciencedirect.com/science/article/pii/S0079661101000350
Bertignac M., Lehodey P., Hampton J., (1998). A spatial population dynamics simulation model of tropical tunas using a habitat index based on environmental parameters. Fisheries Oceanography, 7: 326-334. http://onlinelibrary.wiley.com/doi/10.1046/j.1365-2419.1998.00065.x/full
Lehodey P., André J-M., Bertignac M., Hampton J., Stoens A., C. Menkès, L., Memery, Grima N., (1998). Predicting skipjack tuna forage distributions in the Equatorial Pacific using a coupled dynamical bio-geochemical model. Fisheries Oceanography, 7: 317-325. http://onlinelibrary.wiley.com/doi/10.1046/j.1365-2419.1998.00063.x/full
Sibert, J.R., Hampton, J., Fournier, D.A., Bills, P.J., 1999. An advection–diffusion– reaction model for the estimation of fish movement parameters from tagging data, with application to skipjack tuna (Katsuwonus pelamis). Can. J. Fish. Aquat. Sci. 56, 925–938. http://www.nrcresearchpress.com/doi/abs/10.1139/f99-017
Senina I., Lehodey P., Calmettes B., Dessert M., Hampton J., Smith N., Gorgues T., Aumont O., Lengaigne M., Menkes C., Nicol S., Gehlen M. (2018) Impact of climate change on tropical tuna species and tuna fisheries in Pacific Island waters and high seas areas 14th Scientific Committee of the western Central Pacific Fisheries Commission, Busan, Republic of South Korea, 8-16 August 2018. Working Paper WCPFC-SC14-2018/ EB-WP-01, 44 pp. https://www.wcpfc.int/node/30981
Senina I., Lehodey P., Kiyofuji H., Masujima M., Hampton J., Smith N., Williams P. (2017) Skipjack Japan Impacts of Recent High Catches of Skipjack on Fisheries on the Margins of the WCPFC Convention Area. 13th Scientific Committee of the western Central Pacific Fisheries Commission, Rarotonga, Cook Islands, 9-17 August 2017. Working Paper WCPFC-SC13-2017/SA-WP-07, 42 pp. https://www.wcpfc.int/node/29520.
Lehodey P., Senina I., Calmettes B., Dessert M., Nicol S., Hampton J., Smith N., Gorgues T., Aumont O., Lengaigne M., Menkes C., Gehlen M. (2017). Modelling the impact of climate change including ocean acidification on Pacific yellowfin tuna. 13th Scientific Committee of the western Central Pacific Fisheries Commission, Rarotonga, Cook Islands, 9-17 August 2017. Working Paper WCPFC-SC13-2017/EB-WP-01, 26 pp. https://www.wcpfc.int/node/29559.
Senina I., Lehodey P., Calmettes B., Nicol S., Caillot S., Hampton J. and P. Williams (2016). Predicting skipjack tuna dynamics and effects of climate change using SEAPODYM with fishing and tagging data. WCPFC, 12th Regular Session of the Scientific Committee, Bali, Indonesia 3–11 August 2016, WCPFC-SC12-2016/EB WP-01: 71 pp. http://www.wcpfc.int/node/27443
Senina I., Lehodey P., Calmettes B., Nicol S., Caillot S., Hampton J. and Williams P. (2015). SEAPODYM application for yellowfin tuna in the Pacific Ocean. 11th Regular Session of the scientific committee, Pohnpei, Federated States of Micronesia, 5-13 August 2015, WCPFC-SC11-2015/EB-IP-01: 66 pp. http://www.wcpfc.int/system/files/EB-IP-01%20SEAPODYM%20in%20WCPO.pdf
Lehodey P., Senina I., Titaud O., Calmettes B., Conchon A., Dragon A-C., Nicol S., Caillot S., Hampton J, Williams P. (2014). Project 62: SEAPODYM applications in WCPO. 10th regular session of the Scientific Steering Committee, 6-14 August 2014, Majuro, Republic of the Marshall islands. WCPFC-SC10-2014/EB-WP-02 Rev 1. http://www.wcpfc.int/system/files/EB-WP-02%20Rev%201%20SEAPODYM.pdf
Dragon, A-C, Senina I., Lehodey P.,(2014) Applications of the SEAPODYM model to swordfish in the Pacific and Indian Oceans. 12th Working Party Billfish of the Indian Ocean Tuna Commission. IOTC–2014–WPB12–16 Rev_1: 38 pp. http://www.iotc.org/fr/documents/applications-seapodym-model-swordfish-pacific-and-indian-ocean
Lehodey P., Senina I., Titaud O., Calmettes B., Nicol S., Hampton J, Caillot S., Williams P. (2013). Project 62: SEAPODYM applications in WCPO. 9th regular session of the Scientific Steering Committee, 6-14 August 2013, Pohnpei, Federated States of Micronesia. WCPFC‐SC9‐2012/EB‐WP‐03 Rev 1. http://www.wcpfc.int/meetings/2013/9th-regular-session-scientific-committee
Senina, I., Royer, F., Lehodey, P., Hampton, J., Nicol, S., Ogura, M., Kiyofuji, H and J. Sibert. 2012. Integrating conventional and electronic tagging data into SEAPODYM. Pelagic Fisheries Research Program of University of Hawaii at Manoa Newsletter, V. 16, No 1
Lehodey P., Senina I., Hampton J., Nicol S., Williams P., Jurado Molina J., Abecassis M., Polovina J. (2012). Project 62: SEAPODYM working progress and applications to Pacific tuna and billfish population and fisheries. 8th regular session of the Scientific Steering Committee, 7-15 August 2012, Busan, Republic of Korea.WCPFC-SC8-2012/EB-IP 06. http://www.wcpfc.int/system/files/documents/meetings/scientific-committee/8th-regular-session/
Lehodey P., Senina I., Calmettes B., Hampton J., Nicol S., Williams P., Jurado Molina J., Ogura M., Kiyofuji H., Okamoto S. (2011). SEAPODYM working progress and applications to Pacific skipjack tuna population and fisheries. 7th regular session of the Scientific Steering Committee, 8-17 August 2011, Pohnpei, Federate States of Micronesia. WCPFC-SC7-2011/EB- WP 06. http://www.wcpfc.int/meetings/2011/7th-regular-session-scientific-committee
Sibert J., Senina I., Lehodey P. (2011). Prospects for effective conservation of bigeye tuna stocks in the Western Central Pacific Ocean. 7th regular session of the Scientific Steering Committee, 8-17 August 2011, Pohnpei, Federate States of Micronesia. WCPFC-SC7-2011/EB- WP 06. http://www.wcpfc.int/meetings/2011/7th-regular-session-scientific-committee
Lehodey P., Senina I., Calmettes B., Abecassis M., Jurado Molina J., Briand K., Hampton J., Polovina J., Williams P., Nicol S. (2010). Project 62: SEAPODYM applications in WCPO – Progress Report. 6th regular session of the Scientific Steering Committee, 10-19 August 2010, Nukualofa, Tonga. WCPFC-SC6-2010/EB- IP 02. http://www.wcpfc.int/meetings/2010/6th-regular-session-scientific-committee
Lehodey P., Senina I., (2009). A user manual for SEAPODYM version 2.0: application with data assimilation. Fifth regular session of the Scientific Committee of the Western and Central Pacific Fisheries Commission, 10–21 August 2009, Port Vila, Vanuatu, WCPFC-SC5-2009/ EB-IP-13, 82 pp. http://www.wcpfc.int/meetings/2009/5th-regular-session-scientific-committee
Lehodey P., Senina I., (2009). An update of recent developments and applications of the SEAPODYM model. Fifth regular session of the Scientific Committee of the Western and Central Pacific Fisheries Commission, 10–21 August 2009, Port Vila, Vanuatu, WCPFC-SC5-2009/EB-WP-10, 44 pp. http://www.wcpfc.int/meetings/2009/5th-regular-session-scientific-committee
Lehodey P., Senina I., Sibert J., Hampton J. (2008). SEAPODYM.v2: A Spatial Ecosystem And Population Dynamics Model with parameter optimization providing a new tool for tuna management. Fourth regular session of the Scientific Committee of the Western and Central Pacific Fisheries Commission, 11–22 August 2008, Port Moresby, Papua New Guinea. WCPFC-SC4-2008/EB-WP-10: 15 pp.
http://www.wcpfc.int/system/files/documents/meetings/scientific-committee/4th-regular-session/
Senina, I., Sibert, J., Lehodey, P., Murtugudde R. 2005. Seapodym on a mixed-resolution spatial scale. First meeting of the Scientific Committee of the Western and Central Pacific Fisheries Commission WCPFC-SC1, Noumea, New Caledonia, 8-19 August 2005. ME-WP-2: 22 pp. http://www.spc.int/OceanFish/Html/WCPFC/SC1/pdf/SC1_ME_WP_2.pdf
Lehodey P., (2005a). Reference manual for the Spatial Ecosystem And Populations Dynamics Model SEAPODYM. First meeting of the Scientific Committee of the Western and Central Pacific Fisheries Commission WCPFC-SC1, Noumea, New Caledonia, 8-19 August 2005. ME IP–1: 54 pp. http://www.spc.int/OceanFish/Html/WCPFC/SC1/pdf/SC1_ME_IP_1.pdf
Lehodey P., (2005b). Application of SEAPODYM to the Pacific Pelagic Ecosystem. Recent results and perspectives First meeting of the Scientific Committee of the Western and Central Pacific Fisheries Commission WCPFC-SC1, Noumea, New Caledonia, 8-19 August 2005. EB WP–8: 29pp. http://www.spc.int/OceanFish/Html/WCPFC/SC1/pdf/SC1_EB_WP_8.pdf
Lehodey P., (2005c). First application of SEAPODYM to Pacific bigeye tuna. First meeting of the Scientific Committee of the Western and Central Pacific Fisheries Commission WCPFC-SC1, Noumea, New Caledonia, 8-19 August 2005. ME-WP-1:
http://www.spc.int/OceanFish/Html/WCPFC/SC1/pdf/SC1_ME_WP_1.pdf
Lehodey P., (2004a). A Spatial Ecosystem And Populations Dynamics Model (SEAPODYM) for tuna and associated oceanic top-predator species: Part I – Lower and intermediate trophic components. 17th meeting of the Standing Committee on Tuna and Billfish, Majuro, Republic of Marshall Islands, 9-18 Aug. 2004, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: ECO-1: 26 pp.
http://www.spc.int/OceanFish/Html/SCTB/SCTB17/ECO-1.pdf
Lehodey P., (2004b) A Spatial Ecosystem And Populations Dynamics Model (SEAPODYM) for tuna and associated oceanic top-predator species: Part II – Tuna populations and fisheries. 17th meeting of the Standing Committee on Tuna and Billfish, Majuro, Republic of Marshall Islands, 9-18 Aug. 2004, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: ECO-2: 36 pp. http://www.spc.int/OceanFish/Html/SCTB/SCTB17/ECO-2.pdf
Lehodey P., (2003) SEPODYM application to skipjack tuna (Katsuwonus pelamis) in the Pacific Ocean: impact of ENSO on recruitment and population. 16th meeting of the Standing Committee on Tuna and Billfish, Mooloolaba, Queensland, Australia, 9-16 July 2003, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: SKJ-5
Lehodey P., (2003) First application of SEPODYM to yellowfin tuna population and fisheries in the Pacific Ocean. 16th meeting of the Standing Committee on Tuna and Billfish, Mooloolaba, Queensland, Australia, 9-16 July 2003, Oceanic Fisheries Programme, Secretariat of the Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: YFT-4
Lehodey P., (2003) SEPODYM application to albacore (Thunnus alalunga) in the Pacific Ocean. 16th meeting of the Standing Committee on Tuna and Billfish, Mooloolaba, Queensland, Australia, 9-16 July 2003, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: ALB-9 http://www.spc.int/DigitalLibrary/Doc/FAME/Meetings/SCTB/16/ALB_9.pdf
Lehodey P., (2002) SEPODYM development and application to skipjack population and fisheries. 15th meeting of the Standing Committee on Tuna and Billfish, Honolulu, Hawaii, USA, 22-27 July 2002, Oceanic Fisheries Programme, Secretariat of the Pacific Community, Noumea, New Caledonia, Working Paper: SKJ-5
Lehodey, P. (2001). Sepodym skipjack analysis. 14th Standing Committee on Tuna and Billfish, Noumea, 9-16 August 2000, Secretariat of the Pacific Community, Noumea, Working Paper SKJ-2: 24 pp. http://www.spc.int/DigitalLibrary/Doc/FAME/Meetings/SCTB/14/SKJ_2.pdf
Lehodey, P. 2000. Update on the Spatial Environmental Population Dynamics Model: SEPODYM. 13th Standing Committee on Tuna and Billfish, Noumea, 5-12 July 2000, Secretariat of the Pacific Community, Noumea, Working Paper RG-2: 6 pp. http://www.spc.int/DigitalLibrary/Doc/FAME/Meetings/SCTB/13/RG_2.pdf
Lehodey P. 2000. An application of a Spatial Environmental Population Dynamics Model (SEPODYM) to skipjack [SKJ_3]. Noumea, New Caledonia: SPC, Secretariat of the Pacific Community. Standing Committee on Tuna and Billfish, Noumea, New Caledonia, 5-12 July 2000, 13th. 12 p.
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